Basic Information
VIS ID
TVIS44002896
Fusion event
HTLV-1-LOC101929380 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
86454695/87158878 (Hg38)
End
86454695/87158878 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC101929380
Nearest miRNA
hsa-mir-10397/Upstream/43924; hsa-mir-103a-1/Downstream/1507975;
Nearest TSS
ENST00000502646/Upstream/38730; ENST00000509953/Downstream/80912;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/2774093, chr5-CpG: 34/Downstream/108662
Upstream sequence
AGCACCATGAGGAAATGCAAGGAGACAGGAGTAATAGCAAAGTCATAAATTAAATAGTGACTTAAAAGCAAGAGTTCCTTACTTCCCCAGCACATGATAC
Downstream sequence
CTACCTACTAAAGTTTATTCAGTGGGATATAATGAAACAGTACTATTGCTTCAAAGGAATAAAATCATTCAACGTATAGAAAAATTATTTCAATATCAGG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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