Basic Information
VIS ID
TVIS44002924
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.31
Reference genome
GRCh37/hg19
Start
8470230/8470117 (Hg38)
End
8470230/8470117 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-4277/Upstream/9118; hsa-mir-10397/Downstream/583699;
Nearest TSS
ENST00000502646/Upstream/12426; ENST00000505784/Downstream/55062;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/11957, chr5-CpG: 138/Downstream/1074463
Nearby gene
MIR4458HG(No orient, 7021)
Upstream sequence
gacatagctgaaccataccattcgacccctgacccctccccaatctcatggcctcacatttcaaaacagaatcatgcatttccaacagtcccaccaaggt
Downstream sequence
cttaaatccttccagcagtaacccaagagtccaagtccaaagtctcatctgagacaaggcaagtcccttctgcctatgagcctgtaaagtcgaaagcaag
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate