Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene16235621570073158962615422351560821153071415430431529572154005215537741561271156597215726161543805154782115673301571005152289215251091564015156554515406661542184154810315495501542290154370815620851563309154985715510291525877152700015400651540186156557515656341573227
Basic Information
VIS ID
TVIS44002956
Fusion event
HTLV-1-PSMG3-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
1612863/1573227 (Hg38)
End
1612863/1573227 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA7B
Target gene
PSMG3-AS1
Nearest miRNA
hsa-mir-339/Upstream/550201; hsa-mir-10399/Downstream/270953;
Nearest TSS
ENST00000635602/Upstream/2222; ENST00000421380/Downstream/47427;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/2826, chr7-CpG: 17/Downstream/28841
Upstream sequence
atctcctgacctcaggtgatctgcccgcctcggcctcccaaagtgctgggattacagacgtgagcacccagcctggatgttgtttttgatgacactgcta
Downstream sequence
agcacttatgtgagggattgtttgggtggtttgggtctagatctaagataaagacagtaggaaagaaatgagaggtggaaggttgtcctaggctgaggtg
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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