Basic Information
VIS ID
TVIS44002975
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
30387100/30365553 (Hg38)
End
30387100/30365553 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/1888005; hsa-let-7a-2/Downstream/4576284;
Nearest TSS
ENST00000527297/Upstream/33909; ENST00000529078/Downstream/59999;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/42154, chr11-CpG: 17/Downstream/218458
Nearby gene
MPPED2(-18940) ;
Upstream sequence
ACAGCAAACATATTTACCAGCCTAGAGCAAGATGCTGGAAGAGTCAAGGTGTTCAGAGAAAGCTGAGAGCAGGGATCAATGATTCTGAAATTGGGAGGTG
Downstream sequence
ATAgggccccattgagaataggctggagctcatggaacctctctccaggagcacacgtgaatgcttgcacttcacagcaaaatttttccttttgcttcaa
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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