Basic Information
VIS ID
TVIS44002978
Fusion event
HTLV-1-chr20 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
48659976/50043439 (Hg38)
End
48659976/50043439 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/179486; hsa-mir-1-1/Downstream/542347;
Nearest TSS
ENST00000382410/Upstream/1935; ENST00000444478/Downstream/41312;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/33000, chr20-CpG: 50/Downstream/69292
Nearby gene
TRERNA1(No orient, 1810)
Upstream sequence
CACATCATTCCACCTTTTCCCGCTGCCACTCCACCTCTGTGACCCCTTCTCCTGTCACTCAGTCCTTGCAATAACTAAGGATTCAGCCAGGGTTATGGCT
Downstream sequence
CTGCCtcttttttttttttttttttttagacggagtctcgctctgtcgcccaggctggagtgcagtggcacaatcttggctcactgtaagctccgcctcc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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