Basic Information
VIS ID
TVIS44002988
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
38522931/38057259 (Hg38)
End
38522931/38057259 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/556265; hsa-mir-101-1/Downstream/31972;
Nearest TSS
ENST00000473358/Upstream/9834; ENST00000634732/Downstream/83334;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/9289, chr1-CpG: 42/Downstream/521234
Nearby gene
POU3F1(-10481) ;
Upstream sequence
CTTATCCACTTTACCCTTTTGAAatggctgtacagtattcattgtgttgatgcactgtaatttctttaaaatctactgatggacattgagattgcagctt
Downstream sequence
ctgcctcttgtctgcagggctgTCCTGGGTCCCagggagtagataaactctttgtgacctgaaggagcagagttcagatcaagccatggacattttaggg
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate