Basic Information
VIS ID
TVIS44002997
Fusion event
HTLV-1-LINC02505 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p14
Reference genome
GRCh37/hg19
Start
36638137/36636515 (Hg38)
End
36638137/36636515 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02505
Nearest miRNA
hsa-mir-12113/Upstream/210087; hsa-mir-1243/Downstream/605395;
Nearest TSS
ENST00000502981/Upstream/53785; ENST00000501725/Downstream/5385;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/391748, chr4-CpG: 173/Downstream/607113
Nearby gene
MIR1255B1(-210087) ;
Upstream sequence
agattcacacatgggcactgtgtggatttaagccattgctctaaattaaaagtgaaactgttacgggtttttaggcagtggggttcatgatctgtcattt
Downstream sequence
taagaggctccatgttgataacagacggaagaactataagcacagtttggagactataatctgggtggcaaatgagggaggcttagatgtggttagtagc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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