Basic Information
VIS ID
TVIS44003009
Fusion event
HTLV-1-chr15 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
46339797/46047599 (Hg38)
End
46339797/46047599 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/614470; hsa-mir-11181/Downstream/3121471;
Nearest TSS
ENST00000557528/Upstream/342404; ENST00000559148/Downstream/645689;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/342393, chr15-CpG: 96/Downstream/1136573
Nearby gene
SQOR(+356305) ;
Upstream sequence
tgccctctctcaccactcctattcaacatagtgttggaagttctggccagggcaattaggcaggagaaggaaacaaagggtattcagttaggaaaagagg
Downstream sequence
aagtcaaactgtccctgtttgcagatgacatgattgtatatctagaaaaccccattgtctcagcccaaaatctccttaagctgataagcaacttcagcaa
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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