Basic Information
VIS ID
TVIS44003035
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
122685249/122814541 (Hg38)
End
122685249/122814541 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7a-2/Upstream/662233; hsa-mir-3167/Downstream/566899;
Nearest TSS
ENST00000527297/Upstream/19763; ENST00000533416/Downstream/23959;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/157770, chr11-CpG: 51/Downstream/68137
Nearby gene
UBASH3B(+62) ;
Upstream sequence
GATGATTTAATAAAAAGAAACTTCTCAGTTGATCCAGAGCAATGTCATTTTAAATTCTGAGTGGTCTCTTCCTATCATGTTTTCAGATGTTACTTTGTTC
Downstream sequence
ATTATTATTTCATAAATGTGCATTCAGAGTGTGATTCTGTTTTCAAAAGGCCAGAGGGCGCTTTCTGCTGATGGAAGGGGAGGATGCTCCAGCAGCACTG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate