Basic Information
VIS ID
TVIS44003037
Fusion event
HTLV-1-LOC105371269 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
53588360/53554448 (Hg38)
End
53588360/53554448 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371269
Nearest miRNA
hsa-mir-1225/Upstream/2812071; hsa-mir-11401/Downstream/2691072;
Nearest TSS
ENST00000527434/Upstream/50037; ENST00000570395/Downstream/83926;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/50675, chr16-CpG: 51/Downstream/149257
Nearby gene
RPGRIP1L(-44791) ;
Upstream sequence
TTTCCTGTCCTAATCACAGAGCTCTGTGGAATCTACTTGTCTGGGATGGAAAACTCTTGTACTGAGGCTTGACTTTCATGTCTCTCACTGGTCAATATAG
Downstream sequence
AAAGATGGTGAACTGGGAAAGTAACCAAATATTCTGCTTTCTGTTGTggagaatgtcaaccctatacaaagacacagcatggaaataataactgccatgc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate