Basic Information
VIS ID
TVIS44003039
Fusion event
HTLV-1-ATP9B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q23
Reference genome
GRCh37/hg19
Start
76843023/79083023 (Hg38)
End
76843023/79083023 (Hg38)
Orient
-
Location type
Intronic
Target gene
ATP9B
Nearest miRNA
hsa-mir-1-2/Upstream/6229641;
Nearest TSS
ENST00000575820/Upstream/13541; ENST00000591395/Downstream/4284;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/13227, chr18-CpG: 18/Downstream/63091
Upstream sequence
tcaagcgctgtgctgggagatacacagctctcttcagaggtggcaggcaggaacatttaagtctgctgaggctgtgcccacaacctacccttcccccagg
Downstream sequence
tgctctgtcacaggaagatgggagttttatctataagcccctgactggggcagctgcctttctttcagagatgcccttcccagagaggaggaatctagag
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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