Basic Information
VIS ID
TVIS44003043
Fusion event
HTLV-1-OXNAD1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
16331135/16289628 (Hg38)
End
16331135/16289628 (Hg38)
Orient
+
Location type
Intronic
Target gene
OXNAD1
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-155-5p ; hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-12127/Upstream/415779; hsa-let-7g/Downstream/643568;
Nearest TSS
ENST00000440867/Upstream/24162; ENST00000607464/Downstream/24811;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/24149, chr3-CpG: 113/Downstream/223192
Upstream sequence
GAGGAGCAAGATTAGAGAAATAAGACTTTATACCTACCCTTGAGCAGGGCTGCCACACTGTAGATAGATAATATCCTTGCAACCTACACAAGCATGTGTG
Downstream sequence
GCAGCCCTGATTCTCACAGGACTGCACATAACATAGCACTGTATTCCTTGGCATCTTTTTCAAACTGTgtcctcccccattactcatctggtaagcattg
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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