Basic Information
VIS ID
TVIS44003060
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q24
Reference genome
GRCh37/hg19
Start
104972346/104051189 (Hg38)
End
104972346/104051189 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2720775; hsa-mir-1243/Downstream/5437509;
Nearest TSS
ENST00000502981/Upstream/89573; ENST00000505680/Downstream/179191;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/331549, chr4-CpG: 88/Downstream/1094850
Nearby gene
TACR3(-331373) ;
Upstream sequence
ACTggcacactctaagatggctcccagtgatccctccttcctttgattcacacctttgtgtaatcatttgccttgaggtggcaggatttggtgacttact
Downstream sequence
tctagtgaattggacacagcagagttgactggatgtcaattcaatgaacatgtcctgcaatagattgtgcttccgtgttgggttttttctcttcaaattc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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