VISDB Viral Integration Site DataBase

VIS ID

TVIS44003064

Fusion event

HTLV-1-AVL9 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr7

Cytoband

p14.3

Reference genome

Start

End

32536590/32496978 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-1226-3p ; hsa-mir-218-5p ; hsa-mir-6516-5p ; hsa-mir-1273e ; hsa-mir-455-3p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-593-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-4534 ; hsa-mir-8082 ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-4537 ; hsa-mir-1273f ; hsa-mir-219b-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6746-5p ; hsa-mir-939-3p ; hsa-mir-1247-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-183-5p ; hsa-mir-4802-5p ; hsa-mir-508-5p ; hsa-mir-302f ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6827-5p ; hsa-mir-6090 ; hsa-mir-6081 ; hsa-mir-661 ; hsa-mir-3166 ; hsa-mir-3192-5p ; hsa-mir-922 ; hsa-mir-1324 ; hsa-mir-4524b-3p ; hsa-mir-195-5p ; hsa-mir-15a-5p ; hsa-mir-497-5p ; hsa-mir-6838-5p ; hsa-mir-15b-5p ; hsa-mir-424-5p ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-20b-3p ; hsa-mir-383-3p ; hsa-mir-2114-5p ; hsa-mir-5588-3p ; hsa-mir-6505-5p ; hsa-mir-1299 ; hsa-mir-636 ; hsa-mir-6128 ; hsa-mir-875-3p ; hsa-mir-4772-3p ; hsa-mir-518c-5p ; hsa-mir-520f-3p ; hsa-mir-302c-3p ; hsa-mir-514a-5p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6847-3p ; hsa-mir-4755-3p ; hsa-mir-5693 ; hsa-mir-1972 ; hsa-mir-7153-5p ; hsa-mir-146b-5p ; hsa-mir-146a-5p ; hsa-mir-6501-3p ; hsa-mir-3925-5p ; hsa-mir-3923 ; hsa-mir-4511 ; hsa-mir-4311 ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-4668-5p ; hsa-mir-3613-3p ; hsa-mir-30e-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p

Nearest miRNA

hsa-mir-1183/Upstream/2207088; hsa-mir-10399/Downstream/236003;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/1050, chr7-CpG: 160/Downstream/230945

Upstream sequence

tcacttgagcccaggagtttgagaccagcttagataacaaagggaaacactgtctccacaaaaaaattaaaaaattagttgcatgtgatagcgcacttgt

Downstream sequence

agtcccagctactcggtaggctaaggtgggaacatcgcttgagcccaggaggctgaggctacagtgacccttgatcccaccactgcactccagcctgggt