Basic Information
VIS ID
TVIS44003090
Fusion event
HTLV-1-LINC01278 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
62728005/63508125 (Hg38)
End
62728005/63508125 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC01278
Nearest miRNA
hsa-let-7f-2/Upstream/8056543; hsa-mir-105-1/Downstream/277877;
Nearest TSS
ENST00000429181/Upstream/156781; ENST00000617377/Downstream/135923;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/156578, chrX-CpG: 43/Downstream/246708
Upstream sequence
TAGAAGGAGCTAATGGAACAATTACAGAATGAGAATTAAACTACTGAGATTATAAAACTACGGATCTGACATATTTTTTCTAAACCAAGAATAGGAAATG
Downstream sequence
GCACTAATGATTTATTGCAAGCTTTGCTGGAccacttatggtcccaatcttccattaacattaagatatattcaactactggctgggcgcagtggctcac
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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