Basic Information
VIS ID
TVIS44003097
Fusion event
HTLV-1-CAPN10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
241528278/240588861 (Hg38)
End
241528278/240588861 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2J
Target gene
CAPN10
Nearest miRNA
hsa-mir-10b/Upstream/132772; hsa-mir-3133/Downstream/889044;
Nearest TSS
ENST00000437798/Upstream/1990; ENST00000432084/Downstream/1023;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1443, chr2-CpG: 28/Downstream/1684
Upstream sequence
GAGAGATAATGTCTTAAAGAACATGGGGGTGGGATTCTGCCCGGGGAGCTGGAAGGGAAGGAGTTGTGAGAGGAGCCCAGGCTCTGAGGGCAGGAGAGAG
Downstream sequence
GGTCAGGTCCAgaagcaggaggcaaggtcgaagctcagaggggtgggcaagggcagtgtggatgttttgagtagacggggagaaaggggaaggtatatga
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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