Basic Information
VIS ID
TVIS44003134
Fusion event
HTLV-1-LINC02555 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q12
Reference genome
GRCh37/hg19
Start
40535509/40141707 (Hg38)
End
40535509/40141707 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02555
Nearest miRNA
hsa-mir-1244-3/Upstream/14267628; hsa-let-7i/Downstream/2181993;
Nearest TSS
ENST00000382841/Upstream/35618; ENST00000457989/Downstream/1169;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/35492, chr12-CpG: 68/Downstream/82846
Nearby gene
SLC2A13(-35848) ;
Upstream sequence
ATATAGCCCATATGTGCTAAGGAGAAGTGAAAAGGACAAAGTAATGTCTAATATGTGCAACTGATTTAACACAAGATCAAATCTCAAGATATGGGGGAAT
Downstream sequence
ATAATTTAAAAACTTCACTGATTAAATAGTAAATCAATGATGGAGATGCAGGCGTTCATTTATTCattcattcacttttcaagatgaatttattgagtac
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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