Basic Information
VIS ID
TVIS44003154
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
56293584/56428786 (Hg38)
End
56293584/56428786 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/3151715; hsa-mir-10524/Downstream/961346;
Nearest TSS
ENST00000381078/Upstream/34692; ENST00000426453/Downstream/33282;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/181140, chr6-CpG: 19/Downstream/3584
Nearby gene
DST(-29201) ;
Upstream sequence
TGTAAGATCTCACAATCATCCAGGGTGGAGCTTGCAGGTGTCTGCCATTTGCACTGGAGTTGGTTGTGTAGATATTTAATAACTGAGACTTTATGACTGT
Downstream sequence
ACTTAATTTTCTTCCTATTATGAACCATGAACTAAAGCAGTGGTTCTTCCCTCCTcatttgacattgtctgaagacatttttggcgtcacaactgaaggt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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