Basic Information
VIS ID
TVIS44003182
Fusion event
HTLV-1-LOC101927392 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
106160656/105148428 (Hg38)
End
106160656/105148428 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA8A
Target gene
LOC101927392
Nearest miRNA
hsa-mir-12123/Upstream/663963; hsa-mir-10400/Downstream/7495065;
Nearest TSS
ENST00000518652/Upstream/444709; ENST00000522160/Downstream/40178;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/558952, chr8-CpG: 136/Downstream/169849
Nearby gene
ZFPM2(+170491) ;
Upstream sequence
taactgaaattttgtaccctttgcccagtctctcccaatcccaaggttcctaaccctagccccaggtagccaccattctattctctgcttctatgagtta
Downstream sequence
aaatttttttagattctgcatgtaagtgagatcatgtgatatttacctttcaatgcctgggttatatcacttaacataacgtcctccaggtgtatccatg
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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