Basic Information
VIS ID
TVIS44003208
Fusion event
HTLV-1-chr13 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
61230183/60656049 (Hg38)
End
61230183/60656049 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA13B
Nearest miRNA
hsa-mir-1297/Upstream/5481501; hsa-mir-1267/Downstream/543749;
Nearest TSS
ENST00000623511/Upstream/127086; ENST00000413402/Downstream/29150;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/258138, chr13-CpG: 36/Downstream/3155537
Nearby gene
LINC00378(No orient, 16906)
Upstream sequence
acttgagcccaggagtttgaggttacagtgagctatgattatgccactgcaccccagtctgggtgacagaatgagaccctgtctctttaaaaaaaaatga
Downstream sequence
gtaatagtgattatatcttatttaagttacaagatgtcaaagcaagcatgtaactcagggagaagagtaataaatatcacctgaagatgtattaagtatg
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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