Basic Information
VIS ID
TVIS44003218
Fusion event
HTLV-1-LINC02062 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
98339247/99003543 (Hg38)
End
98339247/99003543 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5F
Target gene
LINC02062
Nearest miRNA
hsa-mir-10397/Upstream/2924331; hsa-mir-103a-1/Downstream/1812939;
Nearest TSS
ENST00000502646/Upstream/74372; ENST00000510302/Downstream/545889;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/73716, chr5-CpG: 62/Downstream/1531678
Nearby gene
LOC100289230(+72534) ;
Upstream sequence
tactgggacagacttagagttgatgctaattcgtggagaattcaaatggtctttgaccaaatagtcagagtggggatttatagatgttagaagttatatg
Downstream sequence
gagctttggtctaatttcttctcacagtgggccctatggtaattctctttatttctgaatttgtagttcccaagaaaacacttgaaaaccaacagactct
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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