Basic Information
VIS ID
TVIS44003238
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
1507643/1507643 (Hg38)
End
1507643/1507643 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1302-9/Upstream/1477362; hsa-let-7a-1/Downstream/3342654;
Nearest TSS
ENST00000422679/Upstream/453019; ENST00000637134/Downstream/472647;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/455403, chr9-CpG: 266/Downstream/507188
Nearby gene
DMRT2(+450089) ;
Upstream sequence
TGTCCACAACACATTAAATAGGAGAGGCCCTGCTtagatagtgaaagtataaagagaagggcagaagtggtcactgtgacagttttcttagtggctacct
Downstream sequence
ttttggggagaagaaaggggcacaggattgtgagggtagcaggagtgactctctgggatgttggtgctataccatttcttggcccctgtgctggatacac
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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