Basic Information
VIS ID
TVIS44003255
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
93531758/93812914 (Hg38)
End
93531758/93812914 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/6586637; hsa-mir-12124/Downstream/2547050;
Nearest TSS
ENST00000440867/Upstream/4705238; ENST00000478400/Downstream/98243;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/4697957, chr3-CpG: 39/Downstream/160796
Upstream sequence
AGTCAGAGAATAAAAAGCTTTTGAAAAAGTTAAAAGAAAAAAAAGACCAGATGGCAAAATTAACCGCAAAATAATGTATGATCCAAAATAAAATCAGTCA
Downstream sequence
ATGCTGCCTGAGTTTTAATGCAATTTAAAAACAACAGACTCACAAAATGCCAGAAAAATTGTCCACACATTCTAAAATAATTCAGCAGGTCAGATTATAA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate