Basic Information
VIS ID
TVIS44003257
Fusion event
HTLV-1-SHQ1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p13
Reference genome
GRCh37/hg19
Start
72859761/72810610 (Hg38)
End
72859761/72810610 (Hg38)
Orient
+
Location type
Intronic
Target gene
SHQ1
miRNAs that regulate target gene
hsa-mir-18a-3p
Nearest miRNA
hsa-let-7g/Upstream/1268521; hsa-mir-12124/Downstream/2403866;
Nearest TSS
ENST00000440867/Upstream/15020; ENST00000498315/Downstream/6640;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/71345, chr3-CpG: 83/Downstream/37179
Nearest cancer related gene
SHQ1(TSG, No orient, 0)
Upstream sequence
AATCCTTCTTTGGAGCCAGGGTTATTCATTACTTTCAACTATGGAACACTATACTGACCTTTATAATAAAAAGTGTGAACACTGACTGCATTTTGAATTA
Downstream sequence
TAAGTAGGCATGAATTCATTCTTGGAAAACACTAAATGCCAAACCAGAGCTACCTTTATTTAAATTATGGGGTGTTCAAACAAATGAGCCTCTTCAGCGG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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