VISDB Viral Integration Site DataBase

VIS ID

TVIS44003286

Fusion event

HTLV-1-CLASP1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr2

Cytoband

q14.3

Reference genome

Start

End

122373627/121616051 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-4467 ; hsa-mir-6809-5p ; hsa-mir-8072 ; hsa-mir-3960 ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-4708-3p ; hsa-mir-6087 ; hsa-mir-1205 ; hsa-mir-4441 ; hsa-mir-6754-5p ; hsa-mir-4270 ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-6751-5p ; hsa-mir-6803-5p ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6835-5p ; hsa-mir-637 ; hsa-mir-3613-3p ; hsa-mir-6852-5p ; hsa-mir-7851-3p ; hsa-mir-490-3p ; hsa-mir-548as-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-5003-5p ; hsa-mir-8485 ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-383-3p ; hsa-mir-3065-3p ; hsa-mir-6871-3p ; hsa-mir-3620-3p ; hsa-mir-504-5p ; hsa-mir-4693-5p ; hsa-mir-3119 ; hsa-mir-892c-3p ; hsa-mir-4676-3p ; hsa-mir-452-5p ; hsa-mir-1283 ; hsa-mir-4320 ; hsa-mir-4456 ; hsa-mir-4654 ; hsa-mir-4766-3p ; hsa-mir-4769-5p ; hsa-mir-5089-5p ; hsa-mir-541-3p ; hsa-mir-548p ; hsa-mir-6507-3p ; hsa-mir-654-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-6838-3p ; hsa-mir-92a-2-5p

Nearest miRNA

hsa-mir-1285-2/Upstream/7894683; hsa-mir-10b/Downstream/5807486;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/85295, chr2-CpG: 104/Downstream/32771

Upstream sequence

GTTCAAAGCATGGGCATTTACTAACTGAAACATGAAAATGTTTCAGCTACAGCATGTGGGGCGTAAGAAGGAGAAAATTAAGAAACACGAAGTCAAATCA

Downstream sequence

TAAATAAGGAGTTCAAGAAGCCTTAATAAAATAATATTCCATACCAGAGTATCAAGAAGGAATTAAATTACCAGCACCAGTTAATCAATAACCACATTAA