VISDB Viral Integration Site DataBase

VIS ID

TVIS44003297

Fusion event

HTLV-1-PRKX integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chrX

Cytoband

p22.33

Reference genome

Start

End

3629981/3711940 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-3941 ; hsa-mir-5689 ; hsa-mir-6768-5p ; hsa-mir-603 ; hsa-mir-487b-5p ; hsa-mir-487a-5p ; hsa-mir-1273g-5p ; hsa-mir-203a-5p ; hsa-mir-515-3p ; hsa-mir-129-5p ; hsa-mir-7850-5p ; hsa-mir-4529-3p ; hsa-mir-4520-2-3p ; hsa-mir-7853-5p ; hsa-mir-105-5p ; hsa-mir-586 ; hsa-mir-5700 ; hsa-mir-4279 ; hsa-mir-4701-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6778-3p ; hsa-mir-4707-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4258 ; hsa-mir-4740-3p ; hsa-mir-764 ; hsa-mir-6504-3p ; hsa-mir-3159 ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-552-3p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-3978 ; hsa-mir-452-3p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-6870-3p ; hsa-mir-4686 ; hsa-mir-3184-3p ; hsa-mir-4520-3p ; hsa-mir-6869-5p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-1200 ; hsa-mir-873-3p ; hsa-mir-4329 ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-6767-3p ; hsa-mir-4798-3p ; hsa-mir-1182 ; hsa-mir-197-3p ; hsa-mir-412-3p ; hsa-mir-6754-3p

Nearest miRNA

hsa-mir-3690-1/Upstream/1102686; hsa-let-7f-2/Downstream/2671966;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/364634, chrX-CpG: 17/Downstream/425

Upstream sequence

gaacagagacagaaagagggagagagaagagaaacagagaaaagagagagagaatgagataaagaggaggagggagggagaggagaaagagagagGGCCT

Downstream sequence

CCTCCCACTCTGTCCTTCCAAATTCAGGCTTTCCTCGTGGGCCCTTCCTCAAGGTCTAAGTGGCAAAGAGGTCACTGAAGGAAGCTAAGTCCCCTCTTCC