Basic Information
VIS ID
TVIS44003298
Fusion event
HTLV-1-TEX13D integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q25
Reference genome
GRCh37/hg19
Start
123469336/124335486 (Hg38)
End
123469336/124335486 (Hg38)
Orient
-
Location type
Intronic
Target gene
TEX13D
Nearest miRNA
hsa-let-7f-2/Upstream/2964433; hsa-mir-105-1/Downstream/9833892;
Nearest TSS
ENST00000429181/Upstream/2826; ENST00000360027/Downstream/10858;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/2139, chrX-CpG: 17/Downstream/867435
Nearby gene
SH2D1A(+10796) ;
Upstream sequence
ATACCCTGGAGAAGCTGAAGTCATGAAGCCTTTTCTTTTCCTTTTTGTTTCACTCCTTTTCCTGAAAAAGCCATGTATGTGGCTGGGAGCAGTTGTGTGA
Downstream sequence
TTTTAGAGTTAGAAGATATGTTGAATTTTAGGAACAGTACTTTTCCTTGAAAATGCTGTTATTCCTTTGGAAACAAATTTTAGAATCACCACACTTCCTT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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