Basic Information
VIS ID
TVIS44003305
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
11257701/11236154 (Hg38)
End
11257701/11236154 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/727828; hsa-let-7a-2/Downstream/420497;
Nearest TSS
ENST00000527297/Upstream/118300; ENST00000526867/Downstream/7561;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/304629, chr11-CpG: 149/Downstream/384420
Nearby gene
GALNT18(No orient, 34720)
Upstream sequence
ttgattgaaagacaaataacagtgaagtacttacaactattgcttcttgtgtgggcttcctcctgagtgtgcacaaaagctggtggccctcggactgagg
Downstream sequence
attcttgattagggcaactgtccctaaaattgagttcctctctgtgctgaaatatttgaaagtaaaaaagaacatcatgataAGACACCATAAATGGGAG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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