Basic Information
VIS ID
TVIS44003352
Fusion event
HTLV-1-LOC100420587 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
GRCh37/hg19
Start
29034825/28543918 (Hg38)
End
29034825/28543918 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC100420587
Nearest miRNA
hsa-mir-10395/Upstream/8144564; hsa-let-7e/Downstream/6578782;
Nearest TSS
ENST00000633603/Upstream/8641; ENST00000587961/Downstream/62770;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/633993, chr19-CpG: 67/Downstream/183176
Upstream sequence
cacccgcgtgagcctcccaaagtgctgggatgacaggcgggaaccactgcacccggccTTCTACTGGGTTTTGTAATGAGCATGTTTGTGGTGGAAATGT
Downstream sequence
GTCAACTGCCTGTCCAGAGACAGTTgtggtggctcacgcctgtaatcccagtaacttgggagggtgaggtgagagatcgtttgagctcaggagtttgaga
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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