Basic Information
VIS ID
TVIS44003356
Fusion event
HTLV-1-LOC101927182 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q12
Reference genome
GRCh37/hg19
Start
40567911/41939271 (Hg38)
End
40567911/41939271 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101927182
Nearest miRNA
hsa-mir-103a-2/Upstream/770193; hsa-mir-1-1/Downstream/2468849;
Nearest TSS
ENST00000382410/Upstream/320777; ENST00000431589/Downstream/51869;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/245951, chr20-CpG: 97/Downstream/59313
Nearby gene
PTPRT(-133481) ;
Upstream sequence
GGGGCTCATGGAGCAAAAGTCACAGATATATATGCCTGTGGAATCCTAAGGGGCCACAGCTTACACAAGTACACACAGAATCACCTTAAATAGTAACCTG
Downstream sequence
Aggctgggagtggtggctcgtgcctgtaatcccagcactttgggaggccgaggtgcatggattgcttgaggtcaggagttcgagaccagcctggccaaca
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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