Basic Information
VIS ID
TVIS44003371
Fusion event
HTLV-1-LOC107986279 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q12
Reference genome
GRCh37/hg19
Start
53181458/52315292 (Hg38)
End
53181458/52315292 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986279
Nearest miRNA
hsa-mir-12113/Upstream/4662549; hsa-mir-1243/Downstream/397390;
Nearest TSS
ENST00000502981/Upstream/236948; ENST00000503051/Downstream/313074;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/238210, chr4-CpG: 141/Downstream/343505
Nearby gene
SPATA18(+217987) ;
Upstream sequence
TTTCAGAGTTTGGTCTCTAGCCTTCTTATTCATAAAATGAGCTACTTTCCCATAAGTTCCTTTTCTGCTTGAGTTGTAAACACTGTTAGTTTCTCTTTGC
Downstream sequence
AACCATATATCCCACAAATAAAAATTAAATGTGCATAGCAAGCAtaggggcaaaggggatttcccttcacccctagcagacctgagtctttaagtctgct
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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