Basic Information
VIS ID
TVIS44003376
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.33
Reference genome
GRCh37/hg19
Start
31312216/31344439 (Hg38)
End
31312216/31344439 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA6H
Nearest miRNA
hsa-mir-3143/Upstream/453467; hsa-mir-10398/Downstream/10785;
Nearest TSS
ENST00000381078/Upstream/42797; ENST00000616296/Downstream/10367;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/35690, chr6-CpG: 118/Downstream/11730
Nearby gene
HLA-B(-9433) ;
Upstream sequence
ttggaaggtgattgaaatcaacaagaatttatctccaagtgttTGCCAGgtgcacttgtaattccagctatgagagcggctgaggcagaaggatatcttg
Downstream sequence
agtccaggagttagagtttagcctgagcaacatttgaggccagccagggaaacatatcaagaccacatctcaaaaataacaacaaaaaaaaaTCCAGGTT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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