Basic Information
VIS ID
TVIS44003381
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
8159055/8159055 (Hg38)
End
8159055/8159055 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/2151151; hsa-let-7a-1/Downstream/10414251;
Nearest TSS
ENST00000422679/Upstream/197975; ENST00000430766/Downstream/325204;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/359209, chr9-CpG: 48/Downstream/554226
Nearby gene
PTPRD(-155191) ;
Nearest cancer related gene
PTPRD(TSG, -155191) ;
Upstream sequence
TGGATCAGAGAAAACAACATGAATGAATAGATGAATGTACTTTTCAATTACATGCATTTCTGGTTTTATTGCTGCCTTCAGCTTAAATTAGAAGAATGAG
Downstream sequence
ATACCACATAGCAAGGGGATCTTCCAAACCTAGTAAATGTAGAGGCTGATTTCTTACTATAAAAATTATAAATCATGATGGTTTAATTTAAACTGAAAGA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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