Basic Information
VIS ID
TVIS44003439
Fusion event
HTLV-1-GSTA12P integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
52642422/52777624 (Hg38)
End
52642422/52777624 (Hg38)
Orient
+
Location type
Intronic
Target gene
GSTA12P
Nearest miRNA
hsa-mir-10398/Upstream/628583; hsa-mir-10524/Downstream/499369;
Nearest TSS
ENST00000381078/Upstream/14055; ENST00000461222/Downstream/21673;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/106434, chr6-CpG: 19/Downstream/217143
Nearby gene
GSTA1(-13756) ;
Upstream sequence
gatgtgttttcctttctcctggatgtagacctggtagtggaattgctaggtcattggtaactctatattggacttttcaaggaatggccaTCAAGGGAGG
Downstream sequence
AGACCCCTCCTCCCAGCTTTGCTGATGCAAAATCAGTCTGGCTGCTTAGGTCTGTATCAAATGCTGCACTTAGGTAAGCCTAGTATCTTGGGCACCAGCC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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