Basic Information
VIS ID
TVIS44003442
Fusion event
HTLV-1-LOC111089942 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q33
Reference genome
GRCh37/hg19
Start
137029263/137344517 (Hg38)
End
137029263/137344517 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC111089942
Nearest miRNA
hsa-mir-10525/Upstream/441223; hsa-mir-10399/Downstream/779241;
Nearest TSS
ENST00000635602/Upstream/652; ENST00000418554/Downstream/9966;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/179918, chr7-CpG: 117/Downstream/501862
Nearby gene
PTN(-717) ;
Upstream sequence
CATTTCATTCAATACAGGAAAGACGCTAAGGCAATGCATAGGTAAATATTTATGATAAAGATGAGATAAAAGTATTGTGTAAAAGGATTAAGATGTATTA
Downstream sequence
TACAAATTCACCCAAACATTTTCGAAATGTAAATTTCGAGATTTTCTGCCACTTATCAGCTTTTCCTGCTCCGTGGCTAGCTCCTTTTACCTACTTTTAC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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