Basic Information
VIS ID
TVIS44003451
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
64639350/64245570 (Hg38)
End
64639350/64245570 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/421843; hsa-mir-1178/Downstream/376939;
Nearest TSS
ENST00000382841/Upstream/23274; ENST00000540203/Downstream/25003;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/22964, chr12-CpG: 73/Downstream/144660
Nearby gene
C12orf56(No orient, 21413)
Upstream sequence
gtgggcacagccctcaaaagtgggattagtgcccttatatgagactccagagagctccctggccacttccactatatgaagacacagtgagaggacagcc
Downstream sequence
atctatgaaccaggaagcaggccctcaccagacaccaaatctgccagtgcctcgatcttgaacttcccttgcagctcctcaaaactgtgagaaatatttg
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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