Basic Information
VIS ID
TVIS44003460
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
121478702/121736904 (Hg38)
End
121478702/121736904 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/4642176; hsa-mir-1182/Downstream/24113683;
Nearest TSS
ENST00000473358/Upstream/156380; ENST00000443018/Downstream/21763608;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/217177, chr1-CpG: 312/Downstream/3348605
Upstream sequence
tctaagaatgcttctgtttagataggtgagttttctcccgtatccaacgaaatcctcagagaggtccaaatatccacttgcagattctacagaaagtgtg
Downstream sequence
ttttgaaactcctccatccaaaggaatgttcagctctgtgagttgaactcaatcgtcacaaagcgtttcctgggaatgctactgtctagtttttatgtgc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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