Basic Information
VIS ID
TVIS44003466
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
9558347/9536800 (Hg38)
End
9558347/9536800 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/446421; hsa-let-7a-2/Downstream/971470;
Nearest TSS
ENST00000527297/Upstream/11579; ENST00000524549/Downstream/36881;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/75195, chr11-CpG: 230/Downstream/35999
Nearby gene
ZNF143(+8276) ;
Upstream sequence
CTAAACTGTGGCTATGTTTATCCCAGCAAAACTCCACAGGACTCAGAGTTACTGAAATCCAGCCTGGTAGCAAGGGGTCTTATTCAAGGGGTCTTATTCC
Downstream sequence
TACCATGACTCCTCTCTCCTCCTGCCCCTGAATTCTCTACCCTTCAGAGGAGCTTTTTTTTGtttgttttattttattttattttaATCCTATGACACTA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate