Basic Information
VIS ID
TVIS44003467
Fusion event
HTLV-1-LOC107984515 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
55384737/54990953 (Hg38)
End
55384737/54990953 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984515
Nearest miRNA
hsa-mir-1244-3/Upstream/653639; hsa-let-7i/Downstream/2203551;
Nearest TSS
ENST00000382841/Upstream/6207; ENST00000547559/Downstream/18793;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/402146, chr12-CpG: 33/Downstream/655251
Nearby gene
TESPA1(No orient, 6207)
Upstream sequence
AAAGACACAATAGCAGGTAAAATTCGGGCGTTGTTGTAGATTTGGTATAAGGGAAGAATAGGTAGGGTGAATGAATATGGGGTTAGAGATTAGAGGTAGA
Downstream sequence
ACATGAAAACATGGGTTATTGTGAGAAAGGGGCAGGAGGTCACAGATTGGAGGAAGGGGCAGATTTTTTTTTAAGAGCCTAGGTTCTTCTCTCACCTCCA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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