Basic Information
VIS ID
TVIS44003484
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.21
Reference genome
GRCh37/hg19
Start
116039335/115601530 (Hg38)
End
116039335/115601530 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12E ; FRA12C
Target gene
LOC105370002 ; LOC105370003
Nearest miRNA
hsa-let-7i/Upstream/2309922; hsa-mir-1178/Downstream/547030;
Nearest TSS
ENST00000382841/Upstream/24854; ENST00000549163/Downstream/191;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/149340, chr12-CpG: 46/Downstream/315452
Nearby gene
MED13L(-357046) ;
Upstream sequence
CAAGTGCAGAGAACAGCTTGTGGGACATAAACCCATTAATCCAcctctatccattctgtgcccgccctgggacctctgcatgtgcagcctttgctggtct
Downstream sequence
ctgcctctttctcgttattcaaatttgaactaaatgttacctccacagagacacctccctttctgacctcctaaagcaatcatcctctatgtaatgaccc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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