Basic Information
VIS ID
TVIS44003487
Fusion event
HTLV-1-PSD2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
139104800/139725215 (Hg38)
End
139104800/139725215 (Hg38)
Orient
-
Location type
Intronic
Target gene
PSD2
Nearest miRNA
hsa-mir-10397/Upstream/2077566; hsa-mir-103a-1/Downstream/838456;
Nearest TSS
ENST00000502646/Upstream/40570; ENST00000607370/Downstream/21008;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/13787, chr5-CpG: 16/Downstream/15210
Upstream sequence
TCCAGTGGCCGGCTGGGGTGAGTCAGCCTGGATGAAGTCACCTACTTCCATGCAGACTGTGCCCCCTGACCTGGGAGGCGCCTGTCAGGGGCACCAGCCG
Downstream sequence
AGACTGAGGACAGGCTGGGCAGCACTCCAGGTCGCTGTGTGGCAGCTGATTTAGGGGGCTGGAAATGTCCAGAGCCATCAGAAGCAGCTGGGCGTCTGGG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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