VISDB Viral Integration Site DataBase

VIS ID

TVIS44003512

Fusion event

HTLV-1-TRIM71 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

p22.3

Reference genome

Start

End

32928403/32886911 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-let-7c-5p ; hsa-let-7a-5p ; hsa-mir-125b-5p ; hsa-mir-17-5p ; hsa-let-7b-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-mir-98-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-3607-3p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-3927-3p ; hsa-mir-3935 ; hsa-mir-4495 ; hsa-mir-5093 ; hsa-mir-5680 ; hsa-mir-6831-5p ; hsa-mir-3117-3p ; hsa-mir-3169 ; hsa-mir-3908 ; hsa-mir-4503 ; hsa-mir-4759 ; hsa-mir-8083 ; hsa-mir-651-3p ; hsa-mir-1252-5p ; hsa-mir-593-5p ; hsa-mir-383-5p ; hsa-mir-6839-5p ; hsa-mir-378j ; hsa-mir-2115-3p ; hsa-mir-1243 ; hsa-mir-3156-5p ; hsa-mir-182-5p ; hsa-mir-1271-5p ; hsa-mir-96-5p ; hsa-mir-183-5p ; hsa-mir-5572 ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-6819-5p ; hsa-mir-6812-5p ; hsa-mir-6737-5p ; hsa-mir-4325 ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-1224-5p ; hsa-mir-3915 ; hsa-mir-4473 ; hsa-mir-4671-3p ; hsa-mir-6881-5p ; hsa-mir-1256 ; hsa-mir-4653-3p ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-3614-5p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-4761-3p ; hsa-mir-2110 ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-4468 ; hsa-mir-7155-5p ; hsa-mir-637 ; hsa-mir-8089 ; hsa-mir-4700-5p ; hsa-mir-4667-5p ; hsa-mir-1298-3p ; hsa-mir-2278 ; hsa-mir-1276 ; hsa-mir-3686 ; hsa-mir-452-3p ; hsa-mir-6792-5p ; hsa-mir-202-3p ; hsa-mir-203a-3p ; hsa-mir-34c-3p ; hsa-mir-6868-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-655-5p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-329-5p ; hsa-mir-133b ; hsa-mir-133a-3p ; hsa-mir-5587-5p ; hsa-mir-6780a-3p ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-4679 ; hsa-mir-4677-3p ; hsa-mir-4311

Nearest miRNA

hsa-mir-12127/Upstream/380522; hsa-let-7g/Downstream/2857565;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/64988, chr3-CpG: 67/Downstream/209680

Upstream sequence

AACTTTGCTAACTACTGGGCCCTACAATGTTCTGCAAGGTGTCCCTGGATTTTGCATTGCATTTTCCATTTAGTTAACTTCACAACTGGATGGATGCTTT

Downstream sequence

CTGCCTCTTCTGACCTCTTAAGGAATATGGCTCAATTGCTTTCTGACAAGAGACTTTGGAGGTGTTAGTCCAAGATTTTTAATTCAGCATATTTTTTGAG