Basic Information
VIS ID
TVIS44003579
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
75534944/75905626 (Hg38)
End
75534944/75905626 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA7J
Nearest miRNA
hsa-mir-10525/Upstream/1309600; hsa-mir-10399/Downstream/9571;
Nearest TSS
ENST00000635602/Upstream/6426; ENST00000421059/Downstream/1950;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/26185, chr7-CpG: 79/Downstream/9021
Nearby gene
POR(+9476) ;
Upstream sequence
ctcgctctgttgcccaggctggagtgcagtggcatgatctcagctcactgcaacctctgcctcctgggttcaagcgattctcctgcctgagcctcccgag
Downstream sequence
ttaactgggactacaggcatgctccacgatgccagacaatttttgtatttttagtagagatgtggggggtttcaccatattggccaggctggtctcgaac
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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