Basic Information
VIS ID
TVIS44003580
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
130375817/130690987 (Hg38)
End
130375817/130690987 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA7H
Nearest miRNA
hsa-mir-10525/Upstream/194783; hsa-mir-10399/Downstream/185760;
Nearest TSS
ENST00000635602/Upstream/3555; ENST00000604514/Downstream/43074;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/21848, chr7-CpG: 156/Downstream/42139
Nearby gene
TSGA13(-3549) ;
Upstream sequence
tcttgctgtgtcacccaggctggagtgcagtggcatgatctcggctcactgcaagctccacctcctgggttcacaccattctcctgtctcagcctcccaa
Downstream sequence
gtagctgggactacaggcacccactaccacgcctggctaattttttgtatttttttagtagaggtagggtttcaccgtgttagccaggatggtctcgatc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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