Basic Information
VIS ID
TVIS44003617
Fusion event
HTLV-1-LOC339166 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
5818930/5915610 (Hg38)
End
5818930/5915610 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC339166
Nearest miRNA
hsa-mir-1253/Upstream/945460; hsa-mir-10226/Downstream/739830;
Nearest TSS
ENST00000595228/Upstream/142684; ENST00000572764/Downstream/142197;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/414328, chr17-CpG: 112/Downstream/154385
Upstream sequence
TGACTCATTCTGGGGCTGAGACCCAGGCTCAGTTTGTGGTCAGTGCTCATTGTGGCCACACGGGTGCTTTGGCTGCAGTGGGGCTCATGGTGGAGCATTT
Downstream sequence
CCCAGGAGGGGTGATGGTGGACTGACCcctccagggtgccctgcctcctggggatcatgctttggtgtagtcccttccacatgggctttgggtttggcca
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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