Basic Information
VIS ID
TVIS44003628
Fusion event
HTLV-1-NXNL2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
91183748/88568833 (Hg38)
End
91183748/88568833 (Hg38)
Orient
+
Location type
Intronic
Target gene
NXNL2
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-101-2/Upstream/4598976; hsa-let-7a-1/Downstream/177003;
Nearest TSS
ENST00000422679/Upstream/33647; ENST00000421482/Downstream/83303;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/32836, chr9-CpG: 107/Downstream/422016
Upstream sequence
TAGTTTTTCTGCAATAAGCTAAATGTCAGTATGTAGTTCAGAAGAGAATCCTGTTGTTTTTACATGAATCCACATTTATTTCACGTTCatttataatatg
Downstream sequence
gtttgatgagaacccacttggttacattatggaggctttgatccagcaagaagatctgagatatcttttattcaaattttgttttacatctcttgatgaa
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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