Basic Information
VIS ID
TVIS44003644
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
104673622/104954778 (Hg38)
End
104673622/104954778 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/1430662; hsa-mir-12124/Downstream/4648050;
Nearest TSS
ENST00000440867/Upstream/2280865; ENST00000470756/Downstream/412131;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/3104576, chr3-CpG: 32/Downstream/398907
Nearby gene
ALCAM(+411935) ;
Upstream sequence
AGGATATTATTCTTTAGGATAGTATAGATATTTTGTAATGtaatggtagctgtaaagcaagggaggaaagcctcccaaagaggagcttagcccaagaagt
Downstream sequence
ttcttggctttgcccagaaaataattcaagggcaagttggcgattgaagaaaaaagcttcattgaagaggtagtattacagctcccatggtgtcacagct
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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