Basic Information
VIS ID
TVIS44003676
Fusion event
HTLV-1-LOC105371024 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
101370919/100830714 (Hg38)
End
101370919/100830714 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371024
Nearest miRNA
hsa-mir-10393/Upstream/2046212; hsa-mir-1302-10/Downstream/1129745;
Nearest TSS
ENST00000557528/Upstream/114465; ENST00000558254/Downstream/18847;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/227782, chr15-CpG: 49/Downstream/18813
Nearby gene
ALDH1A3(+48978) ;
Upstream sequence
GCCTTGCAGAGCCACCACGAGAAGGAAGCCGAGGCAGGAACAGAAGTGTCTGCTGTCTATGTGCTAACATGCACACAGACTGTGCCCCAGTTTCTAGCCC
Downstream sequence
CGAGTCACAGCGAGGCTTCTCTGAGGACACAGTCCTGCTCTTTTGCCTGCCAAGTCATCGGCTCCCCGCACCTCTAGTGGGAAGCTGTGGGGTGGCCGAG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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