Basic Information
VIS ID
TVIS44003693
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
18120931/17967997 (Hg38)
End
18120931/17967997 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/294603; hsa-let-7i/Downstream/6244424;
Nearest TSS
ENST00000382841/Upstream/378005; ENST00000536967/Downstream/122144;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/2056397, chr12-CpG: 131/Downstream/1161394
Nearby gene
RERGL(-112872) ;
Upstream sequence
ttcattgtttttgttcttctcagtggaagcctccgacccgaccacagctgtttctagtcagccatcttgGcccttcattgtgcgttttgtgaacttcctt
Downstream sequence
attttctggcactgtaagatgttccaggttcatcttgtgtatttcttgccccagtcttagaatcagccatttctccaggagtcatggtttctttaatcga
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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