Basic Information
VIS ID
TVIS44003700
Fusion event
HTLV-1-LOC101929650 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
81128291/83180522 (Hg38)
End
81128291/83180522 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101929650
Nearest miRNA
hsa-mir-10226/Upstream/512215;
Nearest TSS
ENST00000595228/Upstream/36391; ENST00000572850/Downstream/31474;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/27063, chr17-CpG: 222/Downstream/34841
Nearby gene
RPL23AP87(No orient, 46375)
Upstream sequence
CTAGGACTCGGCCAAGCTGAAGTTCATGCACCCGAGAGCCACAgcctctgccccagacagggatcagaagtagatttacactcccctctgaaagaacaac
Downstream sequence
aacagagaaaacacacaaagcacatttttcaaaaccctgggcatcggTCGCCCGCACTCCGCCACCGTGAGTACACTGCGTGGACCCAGAACCTTGACTC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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